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1

GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species

Challis, Richard J., Kumar, Sujai, Stevens, Lewis, Blaxter, Mark

Journal:

Year:

2017

Language:

english

File:

PDF, 364 KB

english, 2017

2

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

Davey, John W., Hohenlohe, Paul A., Etter, Paul D., Boone, Jason Q., Catchen, Julian M., Blaxter, Mark L.

Journal:

Nature Reviews Genetics

Year:

2011

Language:

english

File:

PDF, 831 KB

english, 2011

3

No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

Koutsovoulos, Georgios, Kumar, Sujai, Laetsch, Dominik R., Stevens, Lewis, Daub, Jennifer, Conlon, Claire, Maroon, Habib, Thomas, Fran, Aboobaker, Aziz A., Blaxter, Mark

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

4

A molecular palaeobiological exploration of arthropod terrestrialization

Lozano-Fernandez, Jesus, Carton, Robert, Tanner, Alastair R., Puttick, Mark N., Blaxter, Mark, Vinther, Jakob, Olesen, Jørgen, Giribet, Gonzalo, Edgecombe, Gregory D., Pisani, Davide

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 618 KB

english, 2016

5

Molecular barcodes for soil nematode identification

Robin Floyd, Eyualem Abebe, Artemis Papert, Mark Blaxter

Journal:

Molecular Ecology

Year:

2002

Language:

english

File:

PDF, 246 KB

english, 2002

6

Immunological genomics of Brugia malayi: filarial genes implicated in immune evasion and protective immunity

Rick M. Maizels, Mark L. Blaxter, Alan L. Scott

Journal:

Parasite Immunology

Year:

2001

Language:

english

File:

PDF, 193 KB

english, 2001

7

A P2X receptor from the tardigrade speciesHypsibius dujardiniwith fast kinetics and sensitivity to zinc and copper

Selvan Bavan, Volko A Straub, Mark L Blaxter, Steven J Ennion

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 670 KB

english, 2009

8

Hox gene evolution in nematodes: novelty conserved

Aziz Aboobaker, Mark Blaxter

Journal:

Current Opinion in Genetics & Development

Year:

2003

Language:

english

File:

PDF, 134 KB

english, 2003

9

Molecular helminthology in the Rockies

Journal:

Year:

2005

Language:

english

File:

PDF, 58 KB

english, 2005

10

Drosophila suzukii

Rota-Stabelli, Omar, Blaxter, Mark, Anfora, Gianfranco

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 233 KB

english, 2013

11

DNA Barcoding of Life || Defining Operational Taxonomic Units Using DNA Barcode Data

Mark Blaxter, Jenna Mann, Tom Chapman, Fran Thomas, Claire Whitton, Robin Floyd and Eyualem Abebe

Journal:

Philosophical Transactions Biological Sciences

Year:

2005

Language:

english

File:

PDF, 1.68 MB

english, 2005

12

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

Yoshida, Yuki, Koutsovoulos, Georgios, Laetsch, Dominik R., Stevens, Lewis, Kumar, Sujai, Horikawa, Daiki D., Ishino, Kyoko, Komine, Shiori, Kunieda, Takekazu, Tomita, Masaru, Blaxter, Mark, Arakawa,

Journal:

Year:

2017

Language:

english

File:

PDF, 8.89 MB

english, 2017

13

Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp

Hearn, Jack, Blaxter, Mark, Schönrogge, Karsten, Nieves-Aldrey, José-Luis, Pujade-Villar, Juli, Huguet, Elisabeth, Drezen, Jean-Michel, Shorthouse, Joseph D., Stone, Graham N., Copenhaver, Gregory P.

Journal:

Year:

2019

Language:

english

File:

PDF, 5.54 MB

english, 2019

14

Genomics and the biology of parasites

David A. Johnston, Mark L. Blaxter, Wim M. Degrave, Jeremy Foster, Alasdair C. Ivens, Sara E. Melville

Journal:

Year:

1999

Language:

english

File:

PDF, 206 KB

english, 1999

15

Molecular Genealogy of Some Nematode Taxa as Based on Cytochrome c and Globin Amino Acid Sequences

Jacques R. Vanfleteren, Yves Van De Peer, Mark L. Blaxter, Susan A.R. Tweedie, Clive Trotman, Liu Lu, Marie-Louise Van Hauwaert, Luc Moens

Journal:

Molecular Phylogenetics and Evolution

Year:

1994

File:

PDF, 967 KB

1994

16

Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background

Nigel J. Saunders, Urmi H. Trivedi, Marian L. Thomson, Christine Doig, Ian F. Laurenson, Mark L. Blaxter

Journal:

Journal of Infection

Year:

2011

Language:

english

File:

PDF, 183 KB

english, 2011

17

Proteomic analysis of secretory products from the model gastrointestinal nematode Heligmosomoides polygyrus reveals dominance of Venom Allergen-Like (VAL) proteins

James P. Hewitson, Yvonne Harcus, Janice Murray, Maaike van Agtmaal, Kara J. Filbey, John R. Grainger, Stephen Bridgett, Mark L. Blaxter, Peter D. Ashton, David A. Ashford, Rachel S. Curwen, R. Alan W

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 1.82 MB

english, 2011

18

The effect of model choice on phylogenetic inference using mitochondrial sequence data: Lessons from the scorpions

Martin Jones, Benjamin Gantenbein, Victor Fet, Mark Blaxter

Journal:

Molecular Phylogenetics and Evolution

Year:

2007

Language:

english

File:

PDF, 618 KB

english, 2007

19

Phylogeny and DNA barcoding of inquiline oak gallwasps (Hymenoptera: Cynipidae) of the Western Palaearctic

Zoltán Ács, Richard J. Challis, Péter Bihari, Mark Blaxter, Alexander Hayward, George Melika, György Csóka, Zsolt Pénzes, Juli Pujade-Villar, José-Luis Nieves-Aldrey, Karsten Schönrogge, Graham N. Sto

Journal:

Molecular Phylogenetics and Evolution

Year:

2010

Language:

english

File:

PDF, 1.51 MB

english, 2010

20

The Brugia malayi genome project: expressed sequence tags and gene discovery

Mark Blaxter, Jennifer Daub, David Guiliano, John Parkinson, Claire Whitton, The Filarial Genome Project

Journal:

Transactions of the Royal Society of Tropical Medicine and Hygiene

Year:

2002

Language:

english

File:

PDF, 1.96 MB

english, 2002

21

Parasitic Helminths from Genomes to Vaccines II: Edinburgh, July 1999

Mark L .blaxter, Rick M. Maizels, Malcolm W. Kennedy

Journal:

Parasite Immunology

Year:

2000

Language:

english

File:

PDF, 46 KB

english, 2000

22

iPhy: an integrated phylogenetic workbench for supermatrix analyses

Martin O Jones, Georgios D Koutsovoulos, Mark L Blaxter

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.34 MB

english, 2011

23

The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not fromWolbachiaendosymbionts

Jeremy Foster, Laura Baldo, Mark Blaxter, Kimberly Henkle-Dührsen, Claire Whitton, Barton Slatko, Claudio Bandi

Journal:

Parasitology Research

Year:

2004

Language:

english

File:

PDF, 200 KB

english, 2004

24

Genomic tools and cDNA derived markers for butterflies

ALEXIE PAPANICOLAOU, MATHIEU JORON, W. OWEN MCMILLAN, MARK L. BLAXTER, CHRIS D. JIGGINS

Journal:

Molecular Ecology

Year:

2005

Language:

english

File:

PDF, 252 KB

english, 2005

25

10.1038/32160

Blaxter, Mark L., De Ley, Paul, Garey, James R., Liu, Leo X., Scheldeman, Patsy, Vierstraete, Andy, Vanfleteren, Jacques R., Mackey, Laura Y., Dorris, Mark, Frisse, Linda M., Vida, J. T., Thomas, W. K

Journal:

Year:

1998

Language:

english

File:

PDF, 322 KB

english, 1998

26

Defence research

DUKES, PETER, MAYER, SUSAN, BLAXTER, ALISON, BROADHEAD, HELEN, NEWTON-CLARKE, MARK J., MILLER, BEVIS, STEVENS, KAREN, WILSON, A. DOUGLAS, WOTTON, PAUL R., McNAMARA, JOSEPH J.

Journal:

Year:

1989

File:

PDF, 151 KB

1989

27

10.1038/35093191

Journal:

Year:

2001

Language:

english

File:

PDF, 99 KB

english, 2001

28

Patenting of genes

Journal:

Year:

1992

File:

PDF, 131 KB

1992

29

Molecular systematics: Counting angels with DNA

Journal:

Year:

2003

Language:

english

File:

PDF, 155 KB

english, 2003

30

Comparative genomics: Two worms are better than one

Journal:

Year:

2003

Language:

english

File:

PDF, 479 KB

english, 2003

31

Evolutionary biology: Animal roots and shoots

Jones, Martin, Blaxter, Mark

Journal:

Year:

2005

Language:

english

File:

PDF, 120 KB

english, 2005

32

Teaching genomics: confusion and clarity

Journal:

Nature Genetics

Year:

2003

Language:

english

File:

PDF, 72 KB

english, 2003

33

Simultaneous genome sequencing of symbionts and their hosts

Sujai Kumar, Mark L. Blaxter

Journal:

Year:

2011

Language:

english

File:

PDF, 1.54 MB

english, 2011

34

Specific serodiagnosis of visceral leishmaniasis using a Leishmania donovani antigen identified by expression cloning

Mark L. Blaxter, Michael A. Miles, John M. Kelly

Journal:

Molecular and Biochemical Parasitology

Year:

1988

Language:

english

File:

PDF, 2.31 MB

english, 1988

35

Sequence, expression and evolution of the globins of the parasitic nematode Nippostrongylus brasiliensis

Mark L. Blaxter, Lisa Ingram, Susan Tweedie

Journal:

Molecular and Biochemical Parasitology

Year:

1994

Language:

english

File:

PDF, 1.26 MB

english, 1994

36

Characterisation of an immunodominant glycoprotein antigen of Onchocerca volvulus with homologues in other filarial nematodes and Caenorhabditis elegans

Timothy I.M. Tree, Andrew J. Gillespie, Kenneth J. Shepley, Mark L. Blaxter, Rocky S. Tuan, Janette E. Bradley

Journal:

Molecular and Biochemical Parasitology

Year:

1995

Language:

english

File:

PDF, 1.12 MB

english, 1995

37

Genes expressed in Brugia malayi infective third stage larvae

Mark L. Blaxter, Nithyakalyani Raghavan, Inca Ghosh, David Guiliano, Wenhong Lu, Steven A. Williams, Barton Slatko, Alan L. Scott

Journal:

Molecular and Biochemical Parasitology

Year:

1996

Language:

english

File:

PDF, 1.57 MB

english, 1996

38

Velvet worms

Mark Blaxter, Paul Sunnucks

Journal:

Current Biology

Year:

2011

Language:

english

File:

PDF, 338 KB

english, 2011

39

Construction of bacterial artificial chromosome libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont

Jeremy M Foster, Sanjay Kumar, Mehul B Ganatra, Ibrahim H Kamal, Jennifer Ware, Jessica Ingram, Jesse Pope-Chappell, David Guiliano, Claire Whitton, Jennifer Daub, Mark L Blaxter, Barton E Slatko

Journal:

International Journal for Parasitology

Year:

2004

Language:

english

File:

PDF, 268 KB

english, 2004

40

NEMBASE4: The nematode transcriptome resource

Benjamin Elsworth, James Wasmuth, Mark Blaxter

Journal:

International Journal for Parasitology

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

41

A gene family of cathepsin L-like proteases of filarial nematodes are associated with larval molting and cuticle and eggshell remodeling

David B. Guiliano, Xiqiang Hong, James H. McKerrow, Mark.L. Blaxter, Yelena Oksov, Jing Liu, Elodie Ghedin, Sara Lustigman

Journal:

Molecular and Biochemical Parasitology

Year:

2004

Language:

english

File:

PDF, 814 KB

english, 2004

42

A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics

Claire Whitton, Jennifer Daub, Mike Quail, Neil Hall, Jeremy Foster, Jennifer Ware, Mehul Ganatra, Barton Slatko, Bart Barrell, Mark Blaxter

Journal:

Molecular and Biochemical Parasitology

Year:

2004

Language:

english

File:

PDF, 268 KB

english, 2004

43

Quantification of Wolbachia bacteria in Brugia malayi through the nematode lifecycle

Katelyn Fenn, Mark Blaxter

Journal:

Molecular and Biochemical Parasitology

Year:

2004

Language:

english

File:

PDF, 104 KB

english, 2004

44

Functional genomics for parasitic nematodes and platyhelminths

A. Aziz Aboobaker, Mark L. Blaxter

Journal:

Trends in Parasitology

Year:

2004

Language:

english

File:

PDF, 523 KB

english, 2004

45

Wolbachia genomes: revealing the biology of parasitism and mutualism

Katelyn Fenn, Mark Blaxter

Journal:

Trends in Parasitology

Year:

2006

Language:

english

File:

PDF, 135 KB

english, 2006

46

Comparative genomics of nematodes

Makedonka Mitreva, Mark L. Blaxter, David M. Bird, James P. McCarter

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 383 KB

english, 2005

47

The small subunit ribosomal RNA sequence of Strongyloides stercoralis

Mark Dorris, Mark Blaxter

Journal:

International Journal for Parasitology

Year:

2000

Language:

english

File:

PDF, 572 KB

english, 2000

48

Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi

Jennifer Ware, Laurie Moran, Jeremy Foster, Janos Posfai, Tamas Vincze, David Guiliano, Mark Blaxter, Jonathan Eisen, Barton Slatko

Journal:

International Journal for Parasitology

Year:

2002

Language:

english

File:

PDF, 452 KB

english, 2002

49

Molecular phylogenetic analysis of the genus Strongyloides and related nematodes

Mark Dorris, Mark E. Viney, Mark L. Blaxter

Journal:

International Journal for Parasitology

Year:

2002

Language:

english

File:

PDF, 348 KB

english, 2002

50

Genes and genomes of Necator americanus and related hookworms

Journal:

International Journal for Parasitology

Year:

2000

Language:

english

File:

PDF, 359 KB

english, 2000

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